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bam file
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reset
1
vote
24
replies
4.9k
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GenomicAlignments - extracting sequence signatures from bam file
bam file
HIV
cytosine
6.6 years ago
achaillon
• 0
1
vote
19
replies
25k
views
Import bamfiles for RNAsequencing analysis
R
rnaseq
bam file
updated 6.0 years ago by
Gordon Smyth
50k • written 6.0 years ago by
Merlin
▴ 10
4
votes
5
replies
1.7k
views
No BAM option in readAligned from the ShortRead package
bioconductor
shortread
bam file
nucler
updated 6.3 years ago by
Dario Strbenac
★ 1.5k • written 6.3 years ago by
jfgout
▴ 10
2
votes
2
replies
1.3k
views
CSAW : at which bam files are corresponding “up” regions
csaw
up regions
bam file
gain and loss of enrichment
updated 8.2 years ago by
Aaron Lun
★ 28k • written 8.2 years ago by
JoannaF
▴ 10
1
vote
5
replies
3.8k
views
Rsamtools: system.file no file found
rsamtools
bam file
updated 6.8 years ago by
Martin Morgan
25k • written 6.8 years ago by
seungjoon.kim
• 0
0
votes
2
replies
1.1k
views
BAM file into R from Illumina
bam file
STAR
Illumina
updated 6.1 years ago by
ta_awwad
▴ 10 • written 6.1 years ago by
soheilazareie
• 0
0
votes
1
reply
1.2k
views
Questions for MEDIPS getPairedGRange function in MEDIPS.readRegionsFile.R
medips
bam file
7.9 years ago
fkuo
▴ 10
0
votes
0
replies
1.5k
views
Merge two BAM files into one paired-end file
paired-end reads
bam file
6.5 years ago
ioannis.vardaxis
▴ 30
8 results • Page
1 of 1
Recent ...
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Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
swbarnes2
★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Comment: DESeq2- Mysterious interaction suppresses DEGs
by
shaunpeterson
• 0
The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…
Comment: STRINGdb : error with string_db$plot_network()
by
damian.szk
▴ 80
ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …
Comment: STRINGdb : error with string_db$plot_network()
by
ninidea
• 0
> Does the vignette produce the same error? No. Anyway, I finally solved the problem. I don't know why, but I removed: protocol='http' fr…
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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Vincent J. Carey, Jr.
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